JBrowse

The JBrowse genome browser allows you to visually explore genomes and their associated large-scale datasets. JBrowse is a widely used application that is fast, intuitive, and compatible with most web browsers.

Phaseolus acutifolius (Tepary bean)

Sequence Assembly: Phaseolus acutifolius: W6 15578 genome assembly v2.0
This JBrowse visualizes tepary bean W6 15578 genome assembly (version 2.0) using data generated by the University of Saskatchewan. Please contact Dr. Kirstin Bett before publishing any manuscripts which utilized this JBrowse.

Launch JBrowse

Cicer arietinum (Chickpea)

Sequence Assembly: Cicer arientinum (Kabuli): CDC Frontier Genome Assembly v1.0

This JBrowse represents the ∼738Mb draft whole genome shotgun sequence of CDC Frontier, a kabuli chickpea variety, which contains an estimated 28,269 genes.

Launch JBrowse

Phaseolus vulgaris (Dry Bean)

Sequence Assembly: Phaseolus vulgaris: G19833 Genome Assembly v2.1
This JBrowse references a new PacBio-based assembly of the Phaseolus vulgaris G19833 genome with 27,433 genes.

Launch JBrowse

Cicer arietinum (Chickpea)

Sequence Assembly: Cicer arientinum (Desi): ICC4958 Genome Assembly v2.0
This JBrowse visualizes the desi chickpea ICC4958 genome assembly (version 2.0) which coveres more than 94% of the estimated gene space and predicted the presence of 30,257 genes.

Launch JBrowse

Lens culinaris (Cultivated Lentil)

Sequence Assembly: Lens culinaris: CDC Redberry Genome Assembly v1.2
This JBrowse includes pre-release data generated by the University of Saskatchewan. Please contact Dr. Kirstin Bett before publishing any manuscripts which utilized this JBrowse.

Launch JBrowse

Lens culinaris (Cultivated Lentil)

Sequence Assembly: Lens culinaris: CDC Redberry Genome Assembly v2.0
This JBrowse includes pre-release data generated by the University of Saskatchewan. It is currently only available upon signing our EULA and, as such, please contact Dr. Kirstin Bett before publishing any manuscripts which utilized this JBrowse.

Launch JBrowse

Colletotrichum lentis

Sequence Assembly: Colletotrichum lentis: CT30 Genome Assembly v1.0
This pathogen-focused JBrowse is useful for exploring genes contributing to pathogen virulence. Specifically Colletotrichum lentis causes anthracnose in Lentil which is a serious disease in lentil that can account for up to 70% crop loss.

Launch JBrowse

Medicago truncatula (Medicago)

Sequence Assembly: Medicago truncatula: A17 Genome Assembly v4.0
This assembly represents the fourth version of the Medicago truncatula A17 genome consists of ~412 Mb sequence and 50,894 genes.

Launch JBrowse

Glycine max (Soybean)

Sequence Assembly: Glycine max: Williams 82 Genome Assembly v4.0
The JBrowse is based on the 4th version of the Williams82 Soybean genome assembly with an N50 of 419.3 kbp and 52,872 genes.

Launch JBrowse