Phaseolus vulgaris: G19833 Genome Assembly v2.1

Overview
Assembly Details
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Citation
Phaseolus vulgaris v2.1, DOE-JGI and USDA-NIFA, http://phytozome.jgi.doe.gov/
Overview
Date Released
April 2017
Data Source
Source Name
: G19833
Source URI
: https://phytozome.jgi.doe.gov/pz/portal.html#!bulk?org=Org_Pvulgaris
Statistics
Assembly Genome Size
537.2 Mb
Number Of Scaffolds
478
Scaffold N50 value
5
Scaffold N50 length
49.7 Mb
Number Of Genes
27,433
This version represents a new PacBio-based assembly of the Phaseolus vulgaris G19833 genome. It consists of 83.2x long-read sequence coverage of the genome which was assembled into 11 chromosomes containing 95.3% of the sequence.
Assembly Details
Workflow/Pipeline Name
Phytozome Assembly workflow
Algorithm
FALCON
Program Version
unknown
Sequence was generated on the Pacific Biosciences platform and then assembled using FALCON. The assembly was then corrected using a genetic map consisting of 7,015 markers and the sequence was corrected using ~70x of illumina reads (2x250, 800bp insert). Methodology describing the assembly process is available on the Phytozome 12.1 website.
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Sources
LegFed DataStore
Access at CyVerse Data Commons
Original Source
Phytozome 12.1

This data is publicly available at the above locations. It can be used with citation for small-scale analysis.

Phaseolus vulgaris v2.1, DOE-JGI and USDA-NIFA, http://phytozome.jgi.doe.gov/

For large-scale analysis please access the phytozome website for collaborator contact information.