Cicer arientinum (Desi): ICC4958 Genome Assembly v2.0

Overview
Parween S, Nawaz K, Roy R, Pole AK, Venkata Suresh B, Misra G, Jain M, Yadav G, Parida SK, Tyagi AK, Bhatia S, Chattopadhyay D. An advanced draft genome assembly of a desi type chickpea (Cicer arietinum L.).. Scientific reports. 2015 Aug 11; 5:12806.
Date Released
August 2015
Data Source
Source Name
: ICC4958
Source Version
: ICC4958_desi version2
Source URI
: https://www.ncbi.nlm.nih.gov/biosample/SAMN03105794
Statistics
Assembly Genome Size
510,879,539
Number Of Scaffolds
38,513
Scaffold N50 value
6
Scaffold N50 length
39,901,017
Percent GC Content
27.95
Number Of Genes
30,257
This assembly represents the second version of the desi chickpea ICC4958 genome. It consists entirely of short-read sequencing data including whole genome shotgun and paired end libraries using next generation sequencing platforms. It represents a 2.7-fold increase in the length of pseudomolecules and a substantial reduction in sequence gaps as compared to the previous assembly of ICC4958 (Parween et al., 2015).
Assembly Details
Workflow/Pipeline Name
Parween S et al., Sci Rep, 2015 Aug 11;5:12806
Algorithm
Program Version
2015
This assembly includes the sequence reads reported in the previous draft assembly (Jain et al., the Plant Journal, 2013 74;5:715), as well as, additional 20kb insert mate pair libraries (total bases: 570,444,270bp and 439,769,976bp). Methodology describing the assembly process is available in Parween S et al. (Sci Rep, 2015 Aug 11;5:12806).
Download
Sources
LegFed DataStore
NCBI Bioproject

This data is publicly available at the above locations. If you use this data in your research, please cite:

Parween S, Nawaz K, Roy R, Pole AK, Venkata Suresh B, Misra G, Jain M, Yadav G, Parida SK, Tyagi AK, Bhatia S, Chattopadhyay D. An advanced draft genome assembly of a desi type chickpea (Cicer arietinum L.).. Scientific reports. 2015 Aug 11; 5:12806.