Medicago truncatula: A17 Genome Assembly v4.0

Overview
Assembly Details
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Citation
Tang H, Krishnakumar V, Bidwell S, Rosen B, Chan A, Zhou S, Gentzbittel L, Childs KL, Yandell M, Gundlach H, Mayer KF, Schwartz DC, Town CD. An improved genome release (version Mt4.0) for the model legume Medicago truncatula.. BMC genomics. 2014 Apr 27; 15:312.
Overview
Date Released
June 2014
Data Source
Source Name
: A17 strain
Source URI
: https://www.ncbi.nlm.nih.gov/biosample/SAMN02299339
Statistics
Assembly Genome Size
412,924,424
Number Of Scaffolds
2,187
Scaffold N50 value
4
Scaffold N50 length
49,172,423
Number Of Genes
50,894
This assembly represents the fourth version of the Medicago truncatula A17 genome. It consists entirely of short read data from a mixture of sequencing technologies including Illumina, 454 and Sanger. The scaffolds were ordered based on an optical map, genetic map and BAC/fosmid-end sequences.
Assembly Details
Workflow/Pipeline Name
JCVI Pipeline 2014
Algorithm
AllPaths v. R40324
Program Version
R40324
This assembly includes short read data from a mixture of sequencing technologies including Illumina, 454 and Sanger including 97.8-fold coverage of short insert paired-end libraries, 54.2-fold coverage of long insert mate pair libraries. This data was assembled using ALLPATHS-LG (version R41245) with default settings. Full methodology is available in Tang et al. (BMC Genomics; 15: 312; 2014).
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Sources
LegFed DataStore
Access at CyVerse Data Commons
NCBI Bioproject
PRJNA10791
Original Source
Medicago truncatula Genome Database

This data is publicly available at the above locations. If you use this data in your research, please cite:

Tang, H., Krishnakumar, V., Bidwell, S. et al. An improved genome release (version Mt4.0) for the model legume Medicago truncatula. BMC Genomics 15, 312 (2014). https://doi.org/10.1186/1471-2164-15-312