Cicer arientinum (Kabuli): CDC Frontier Genome Assembly v1.0

Citation
Varshney RK, Song C, Saxena RK, Azam S, Yu S, Sharpe AG, Cannon S, Baek J, Rosen BD, Tar'an B, Millan T, Zhang X, Ramsay LD, Iwata A, Wang Y, Nelson W, Farmer AD, Gaur PM, Soderlund C, Penmetsa RV, Xu C, Bharti AK, He W, Winter P, Zhao S, Hane JK, Carrasquilla- Garcia N, Condie JA, Upadhyaya HD, Luo M, Thudi M, Gowda CLL, Singh NP, Lichtenzveig J, Gali KK, Rubio J, Nadarajan N, Dolezel J, Bansal KC, Xu X, Edwards D, Zhang G, Kahl G, Gil J, Singh KB, Datta SK, Jackson SA, Wang J, Cook DR. Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement. Nature Biotechnology. 2013; 31:240–246.
Overview
Authors

Varshney RK, Song C, Saxena RK, Azam S, Yu S, Sharpe AG, Cannon S, Baek J, Rosen BD, Tar'an B, Millan T, Zhang X, Ramsay LD, Iwata A, Wang Y, Nelson W, Farmer AD, Gaur PM, Soderlund C, Penmetsa RV, Xu C, Bharti AK, He W, Winter P, Zhao S, Hane JK, Carrasquilla- Garcia N, Condie JA, Upadhyaya HD, Luo M, Thudi M, Gowda CLL, Singh NP, Lichtenzveig J, Gali KK, Rubio J, Nadarajan N, Dolezel J, Bansal KC, Xu X, Edwards D, Zhang G, Kahl G, Gil J, Singh KB, Datta SK, Jackson SA, Wang J, Cook DR

Assembly Genome Size
530,893,862
Number Of Scaffolds
7,545
Scaffold N50 value
175
Scaffold N50 length
697,963
Number Of Genes
28,269
This assembly represents the first version of the kabuli chickpea CDC Frontier genome capturing 73.8% of the estimated sequence and consisting of 153 Gb (207X coverage) short-read sequencing data.
Methodology
Genus
Cicer
Scientific Name
Cicer arientinum
Data Source Version
Sequencing 2012
Data Source Name
CDC Frontier
Data Source URI

https://www.ncbi.nlm.nih.gov/biosample/2981489
Abbreviation
cicar.1CDCFrontier
Program, Pipeline, Workflow or Method Name
Varshney RK et al., Nat.Biotech. 2013; 31(3):240
Program Version
2013

This genome assembly is comprised of 11 paired-end libraries totalling 87.65 Gb of high quality sequence. Methodology describing the assembly process is available in Varshney RK, et al. (Nat. biotech. 2011; 30:83)

Download
LegFed DataStoreAccess at CyVerse Data Commons
NCBI BioprojectPRJNA175619
Original SourceGigaDB

This data is publicly available at the above locations. If you use this data in your research, please cite:

Varshney RK, Song C, Saxena RK, Azam S, Yu S, Sharpe AG, Cannon S, Baek J, Rosen BD, Tar'an B, Millan T, Zhang X, Ramsay LD, Iwata A, Wang Y, Nelson W, Farmer AD, Gaur PM, Soderlund C, Penmetsa RV, Xu C, Bharti AK, He W, Winter P, Zhao S, Hane JK, Carrasquilla- Garcia N, Condie JA, Upadhyaya HD, Luo M, Thudi M, Gowda CLL, Singh NP, Lichtenzveig J, Gali KK, Rubio J, Nadarajan N, Dolezel J, Bansal KC, Xu X, Edwards D, Zhang G, Kahl G, Gil J, Singh KB, Datta SK, Jackson SA, Wang J, Cook DR. Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement. Nature Biotechnology. 2013; 31:240–246.