Phaseolus vulgaris: G19833 Genome Assembly v2.1
Citation
Phaseolus vulgaris v2.1, DOE-JGI and USDA-NIFA, http://phytozome.jgi.doe.gov/
Overview
| Assembly Genome Size |
537.2 Mb
|
|---|---|
| Number Of Scaffolds |
478
|
| Scaffold N50 value |
5
|
| Scaffold N50 length |
49.7 Mb
|
| Number Of Genes |
27,433
|
Description
This version represents a new PacBio-based assembly of the Phaseolus vulgaris G19833 genome. It consists of 83.2x long-read sequence coverage of the genome which was assembled into 11 chromosomes containing 95.3% of the sequence.
Methodology
| Genus |
Phaseolus
|
|---|---|
| Scientific Name |
Phaseolus vulgaris
|
| Data Source Name |
G19833
|
| Data Source URI |
| Abbreviation |
Phavu.G19833v2.1
|
|---|---|
| Program, Pipeline, Workflow or Method Name |
Phytozome Assembly workflow
|
| Program Version |
unknown
|
Analysis Method
Sequence was generated on the Pacific Biosciences platform and then assembled using FALCON. The assembly was then corrected using a genetic map consisting of 7,015 markers and the sequence was corrected using ~70x of illumina reads (2x250, 800bp insert). Methodology describing the assembly process is available on the Phytozome 12.1 website.
Download
Data Release
| LegFed DataStore | Access at CyVerse Data Commons |
|---|---|
| Original Source | Phytozome 13 |
This data is publicly available at the above locations. It can be used with citation for small-scale analysis.
Phaseolus vulgaris v2.1, DOE-JGI and USDA-NIFA, https://phytozome-next.jgi.doe.gov/info/Pvulgaris_v2_1
For large-scale analysis please access the phytozome website for collaborator contact information.