Phaseolus vulgaris: G19833 Genome Assembly v2.1

Citation
Phaseolus vulgaris v2.1, DOE-JGI and USDA-NIFA, http://phytozome.jgi.doe.gov/
Overview
Assembly Genome Size
537.2 Mb
Number Of Scaffolds
478
Scaffold N50 value
5
Scaffold N50 length
49.7 Mb
Number Of Genes
27,433
Description
This version represents a new PacBio-based assembly of the Phaseolus vulgaris G19833 genome. It consists of 83.2x long-read sequence coverage of the genome which was assembled into 11 chromosomes containing 95.3% of the sequence.
Methodology
Genus
Phaseolus
Scientific Name
Phaseolus vulgaris
Data Source Name
G19833
Data Source URI
Abbreviation
Phavu.G19833v2.1
Program, Pipeline, Workflow or Method Name
Phytozome Assembly workflow
Program Version
unknown
Analysis Method

Sequence was generated on the Pacific Biosciences platform and then assembled using FALCON. The assembly was then corrected using a genetic map consisting of 7,015 markers and the sequence was corrected using ~70x of illumina reads (2x250, 800bp insert). Methodology describing the assembly process is available on the Phytozome 12.1 website.

Download
Data Release
LegFed DataStoreAccess at CyVerse Data Commons
Original SourcePhytozome 13

This data is publicly available at the above locations. It can be used with citation for small-scale analysis.

Phaseolus vulgaris v2.1, DOE-JGI and USDA-NIFA, https://phytozome-next.jgi.doe.gov/info/Pvulgaris_v2_1

For large-scale analysis please access the phytozome website for collaborator contact information.