Medicago truncatula: A17 Genome Assembly v4.0
Citation
Tang H, Krishnakumar V, Bidwell S, Rosen B, Chan A, Zhou S, Gentzbittel L, Childs KL, Yandell M, Gundlach H, Mayer KF, Schwartz DC, Town CD. An improved genome release (version Mt4.0) for the model legume Medicago truncatula.. BMC genomics. 2014 Apr 27; 15:312.
Overview
| Assembly Genome Size |
412,924,424
|
|---|---|
| Number Of Scaffolds |
2,187
|
| Scaffold N50 value |
4
|
| Scaffold N50 length |
49,172,423
|
| Number Of Genes |
50,894
|
Description
This assembly represents the fourth version of the Medicago truncatula A17 genome. It consists entirely of short read data from a mixture of sequencing technologies including Illumina, 454 and Sanger. The scaffolds were ordered based on an optical map, genetic map and BAC/fosmid-end sequences.
Methodology
| Genus |
Medicago
|
|---|---|
| Scientific Name |
Medicago truncatula
|
| Data Source Version |
SAMN02299339 2013
|
| Data Source Name |
A17 strain
|
| Data Source URI |
| Abbreviation |
Medtr.A17
|
|---|---|
| Program, Pipeline, Workflow or Method Name |
JCVI Pipeline 2014
|
| Program Version |
R40324
|
Analysis Method
This assembly includes short read data from a mixture of sequencing technologies including Illumina, 454 and Sanger including 97.8-fold coverage of short insert paired-end libraries, 54.2-fold coverage of long insert mate pair libraries. This data was assembled using ALLPATHS-LG (version R41245) with default settings. Full methodology is available in Tang et al. (BMC Genomics; 15: 312; 2014).
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Data Release
| LegFed DataStore | Access at CyVerse Data Commons |
|---|---|
| NCBI Bioproject | PRJNA10791 |
| Original Source | Medicago truncatula Genome Database |
This data is publicly available at the above locations. If you use this data in your research, please cite:
Tang, H., Krishnakumar, V., Bidwell, S. et al. An improved genome release (version Mt4.0) for the model legume Medicago truncatula. BMC Genomics 15, 312 (2014). https://doi.org/10.1186/1471-2164-15-312