Lens odemensis: IG 72623 Genome Assembly 1.0

Overview
Assembly Details
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Citation
Ramsay L, Koh K, Bett KE (2022 Jun 23) Lens odemensis: IG 72623 genome assembly (Lod.1TUR, version 1.0) [dataset]. University of Saskatchewan. Retrieved from https://knowpulse.usask.ca/genome-assembly/Lod.1TUR
Overview
Date Released
June 2022
Data Source
Source Name
: IG 72623
Statistics
Assembly Genome Size
3.55Gb
Scaffold N50 value
349
Scaffold N50 length
3,269 Kb
This assembly of IG 72623 (Lens odemensis) was constructed with long-read data (41x Oxford nanopore reads). There were a total of 3305 contigs with the longest contig spanning 20.3 Mb. The contiguity of the assembly was further validated and improved using HiC data and a genetic map (IG 72543 x IG 72623 intraspecific RIL). The finished assembly is 3.55 Gb arranged in 7 pseudo-molecules and 1360 unplaced unitigs.
Assembly Details
Workflow/Pipeline Name
USASK BettLab long-read genome assembly workflow
Algorithm
smartdenovo
Program Version
n/a
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This genome is available in pre-release form. For access, send a detailed request by email to Dr. Kirstin Bett (k.bett(at)usask.ca).

Please contact Dr. Kirstin Bett for permission to publish an analysis using this genome assembly. Once permission is obtained, you can cite this assembly as

Ramsay L, Koh K, Bett KE (2022 Jun 23) Lens odemensis: IG 72623 genome assembly (Lod.1TUR, version 1.0) [dataset]. University of Saskatchewan. Retrieved from https://knowpulse.usask.ca/genome-assembly/Lod.1TUR