Lens orientalis: BGE 016880 Genome Assembly 1.0
Citation
Ramsay L, Koh K, Sharpe A, Bett KE (2022 Jun 23) Lens orientalis: BGE 016880 genome assembly (Lor.1WPS, version 1.0) [dataset]. University of Saskatchewan. Retrieved from https://knowpulse.usask.ca/genome-assembly/Lor.1WPS
Overview
Date Released | June 2022
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Data Source |
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Assembly Genome Size | 3.75Gb
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Scaffold N50 value | 498
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Scaffold N50 length | 2,316 Kb
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This assembly of BGE 016880 (Lens orientalis) was constructed with long-read data (50x Oxford nanopore reads). There were 3 706 total contigs with the longest contig spanning 11.4 Mb. The contiguity of the assembly was further validated and improved using HiC data and a genetic map (LR-89; BGE 016880 x IG 72529 intraspecific RIL). The finished assembly is 3.75 Gb arranged in 7 pseudo-molecules and 689 unplaced unitigs.
Assembly Details
Workflow/Pipeline Name | USASK BettLab long-read genome assembly workflow
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Algorithm | smartdenovo
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Program Version | n/a
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Download
This genome is available in pre-release form. For access, send a detailed request by email to Dr. Kirstin Bett (k.bett(at)usask.ca).
Please contact Dr. Kirstin Bett for permission to publish an analysis using this genome assembly. Once permission is obtained, you can cite this assembly as
Ramsay L, Koh K, Sharpe A, Bett KE (2022 Jun 23) Lens orientalis: BGE 016880 genome assembly (Lor.1WPS, version 1.0) [dataset]. University of Saskatchewan. Retrieved from https://knowpulse.usask.ca/genome-assembly/Lor.1WPS