RNAseq to investigate carotenoid biosynthesis: developing seeds from LR-68 parents across 3 DPA in 2019
Overview
To investigate gene expression associated with carotenoid biosynthesis and accumulation, and the genetic basis of red and yellow cotyledon colour in lentil, RNA sequencing was carried out on developing seeds of the parents of the LR-68 population: L. orientalis IG 72643 (red cotyledon, high carotenoid content), L. culinaris 3339-3 (yellow cotyledon, low carotenoid content). RNA was extracted from the developing seeds where carotenoid and other pigments production was presumed ongoing at 10, 20 and 30 days post anthesis (DPA) with 4 biological replicates of each genotype, resulting in 24 samples total.
This dataset can be viewed on JBrowse2 at the following link (permission required to access).
Germplasm
Germplasm Genus |
Lens
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Germplasm Scientific Name |
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Germplasm Collection |
LR-68 (Lens orientalis IG 72643 x Lens culinaris 3339-3)
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Experimental Design
Timepoints |
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Biochemical Technique |
RNAseq
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RNA was extracted from the developing seeds of IG 72643 and 3339-3 at 10, 20 and 30 days post anthesis (DPA) with 4 biological replicates of each genotype, resulting in 24 samples total.
Attribution
Researchers
Data Collector |
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Data Custodian |
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Data Curator |