Projects

2009
Double haploids are plants developed from either a male or female gamete, n=1 cell, and therefore are completely homozygous at all loci. Because all traits are visible within one generation, this methodology adds speed and efficiency to breeding programs. The goal of our research is to improve all aspects of the field pea anther culture protocol including: increasing the number of immature pollen grains initiated to become embryogenic, improving the regeneration of haploid embryos, and regenerating plants from those embryos.
2009
A set of 1107 legume cross species orthologous sequences (COS) were amplified from Lens culinaris (CDC Redberry and Eston) and L. ervoides (L01-827a and IG 72815). Sequences were aligned and SNPs identified. A subset of 110 KASP assays were designed for use in L. culinaris. An Illumina GoldenGate array of 768 SNPs was designed for use in L. ervoides or interspecies hybrid populations between Lc and Le.
2008 to 2009
Mixture of eight cultivars with varying seed phenotypes: Indian Head, Commando, CDC LeMay, CDC Robin, and breeding lines 1899T-50 and 1788-4 (CDC, Univ. Saskatchewan, Saskatoon, Canada) All developmental stages of seeds and very young fertilized pods were harvested from mature plants, and divided into the following lots: very young fertilized ovaries, young ovules, enlarging seeds, cotyledons of fully filled seed, seed coats of fully filled seeds. cDNA library was made from a mixture of equal amounts of mRNA extracted from each of the above tissues.
2009
<p>Preparation of EST data: Sequences were extracted from dbEST and were subjected to quality control screening (vector, E. coli, polyA, T, or CT removal, minimum length = 100 bp, &lt; 3% N). Preparation of transcript (ET) database: All sequences from the appropriate divisions of GenBank (including RefSeq) were extracted. Non-coding sequences were discarded and cDNAs and coding sequences from genomic entries were saved. Sequences and related information (e.g. PubMed links) are stored in the qcGene database (qcGene). Assembly: Cleaned EST sequences and non-redundant transcript (ET) sequences were combined. Using the Paracel Transcript Assembler Program, sequences were assembled into contigs. TCs are consensus sequences based on two or more ESTs (and possibly an ET) that overlap for at least 40 bases with at least 94% sequence identity. These strict criteria help minimize the creation of chimeric contigs. These contigs are assigned a TC (Tentative Consensus) number. TCs may comprise ESTs derived from different tissues. The best hits for TC's were assigned by searching the TC set against a non-redundant amino acid database(nraa) using BLAT. The top five hits based on score were selected and displayed for each TC. Caveats: TCs are only as good as the ESTs underlying them; there may be unspliced or chimeric ESTs and thus TCs. There is still redundancy in the TC set because sequences must match end to end and at a certain percent identity to be combined. Directionality of the TCs should not be assumed. Not all TCs contain protein-coding regions.</p>
2009
In many important crop species, the strategy of single seed descent (SSD) enables only 2 - 3 generations per year. Approximately eight generations of inbreeding are required before plants are mostly homozygous (‘true breeding’). This creates a ‘bottleneck’ in cultivar development. Hence, the purpose of this project is to develop a rapid generation cycling technique for CDC pulse crops in order to speed up the breeding process by using in vitro flowering technique.
2009
Lentil has been grown commercially in western Canada since 1970. Ascochyta lentis, the causal agent of ascochyta blight of lentil is established as one of the most economically important diseases of lentil in Western Canada. To deal with this problem, the widely acceptable genetic improvement strategy is to pyramid resistance genes. Developing closely linked single nucleotide polymorphism (SNP) markers for resistance genes is prerequisite for pyramiding resistance genes. To develop SNP markers, a series of selected recombinant inbred line (RIL) populations derived from resistant sources will be phenotyped under greenhouse conditions (pathogenicity tests) followed by screening available SNP markers across the entire set of RIL populations.
2009
Stemphylium blight caused by the fungal pathogen Stemphylium botryosum is a lentil disease that has become more prominent in Saskatchewan in recent years. The disease is not well studied under our growing conditions, and information is sketchy on optimal conditions for serious outbreaks of stemphylium blight, yield loss and appropriate disease management strategies. The objectives of this 5-year project are to develop a protocol for the mass production of spores (conidia) of Stemphylium botryosum for the purpose of controlled inoculations; to conduct replicated field experiments to determine yield loss through stemphylium blight, using the tunnel system evaluated in the pilot study and the spore inoculum developed under (1); and to evaluate and optimize the use of tunnels and spore inoculation for resistance screening of lentil germplasm to stemphylium blight.

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