JBrowse

Lens culinaris (Cultivated Lentil)

Sequence Assembly: Lens culinaris: CDC Redberry Genome Assembly v1.2
This JBrowse is on v1.2 of the CDC Redberry genome assembly, which was primarily sequenced using short-reads and covers ~2.7Gb of sequence, 1.1Gb of which is anchored. Please refer to the newest assembly for Lens culinaris for any new analyses.

Lens culinaris (Cultivated Lentil)

Sequence Assembly: Lens culinaris: CDC Redberry Genome Assembly v2.0
The genome for this JBrowse was constructed using long-reads combined with HiC, an optical and genetic map, to yield 3.69 Gb of sequence and 58,243 genes. Please refer to the assembly page for a citation of this genome.

Phaseolus acutifolius (Tepary bean)

Sequence Assembly: Phaseolus acutifolius: W6 15578 genome assembly v2.0
This JBrowse visualizes tepary bean W6 15578 genome assembly (version 2.0) using data generated by the University of Saskatchewan. Please contact Dr. Kirstin Bett before publishing any manuscripts which utilized this JBrowse.

Lens ervoides (L. ervoides)

Sequence Assembly: Lens ervoides: IG 72815 Genome Assembly 1.0
This JBrowse visualizes the IG 72815 ASM genome assembly (otherwise known as Ler.1DRT) and was constructed with long-read data (52x Oxford nanopore). There are 60,296 genes.

Cicer arietinum (Chickpea)

Sequence Assembly: Cicer arientinum (Kabuli): CDC Frontier Genome Assembly v1.0

This JBrowse represents the ∼738Mb draft whole genome shotgun sequence of CDC Frontier, a kabuli chickpea variety, which contains an estimated 28,269 genes.

Vigna unguiculata (Cowpea)

Sequence Assembly: Vigna unguiculata: IT97K-499-3 Genome Assembly v1.2
V. unguiculate IT97K-499-35

Cicer arietinum (Chickpea)

Sequence Assembly: Cicer arientinum (Desi): ICC4958 Genome Assembly v2.0
This JBrowse visualizes the desi chickpea ICC4958 genome assembly (version 2.0) which coveres more than 94% of the estimated gene space and predicted the presence of 30,257 genes.

Colletotrichum lentis

Sequence Assembly: Colletotrichum lentis: CT30 Genome Assembly v1.0
This pathogen-focused JBrowse is useful for exploring genes contributing to pathogen virulence. Specifically Colletotrichum lentis causes anthracnose in Lentil which is a serious disease in lentil that can account for up to 70% crop loss.

Medicago truncatula (Medicago)

Sequence Assembly: Medicago truncatula: A17 Genome Assembly v4.0
This assembly represents the fourth version of the Medicago truncatula A17 genome consists of ~412 Mb sequence and 50,894 genes.

Phaseolus vulgaris (Dry Bean)

Sequence Assembly: Phaseolus vulgaris: G19833 Genome Assembly v2.1
This JBrowse references a new PacBio-based assembly of the Phaseolus vulgaris G19833 genome with 27,433 genes.

Glycine max (Soybean)

Sequence Assembly: Glycine max: Williams 82 Genome Assembly v4.0
The JBrowse is based on the 4th version of the Williams82 Soybean genome assembly with an N50 of 419.3 kbp and 52,872 genes.